Evolutionary potential of corals to adapt to climate warming

Overview

Genomics and computational analysis of coral adaptation to ocean warming in the Red Sea.

Period: 2022–2025

Funding

  • KAUST Competitive Research Grant — Grant ID: URF/1/4697-01-01 (CoI) — USD 150,000

Team

  • Manuel Aranda — PI (KAUST (Marine Science))
  • Robert Hoehndorf — CoI (KAUST (Professor of Computer Science))

Publications acknowledging this project (14)

  • (2025) Lattice-based ALC ontology embeddings with saturation
  • (2024) Predicting protein functions using positive-unlabeled ranking with ontology-based priors Supplementary Material
  • (2024) Neuro-symbolic AI in Life Sciences
  • (2023) DeepGOMeta: Functional Insights into Microbial Communities with Deep Learning-Based Protein Function Prediction
  • (2022) Exploring the Use of Ontology Components for Distantly-Supervised Disease and Phenotype Named Entity Recognition
  • (2022) Context-based protein function prediction in bacterial genomes
  • (2022) INDIGENA: inductive prediction of disease--gene associations using phenotype ontologies Supplementary Material
  • (2022) Large-Scale Knowledge Integration for Enhanced Molecular Property Prediction
  • (2018) Ontology Embedding: A Survey of Methods, Applications and Resources
  • (2015) The application of Large Language Models to the phenotype-based prioritization of causative genes in rare disease patients
  • (2015) The application of Large Language Models to the phenotype-based prioritization of causative genes in rare disease patients
  • (2012) Exploring the Use of Ontology Components for Distantly-Supervised Disease and Phenotype Named Entity Recognition
  • (2012) Improving the classification of cardinality phenotypes using collections
  • () Lattice-based ALC ontology embeddings with saturation

Topics: Genomics, Protein function