Improving the classification of cardinality phenotypes using collections

Year: 2023

Venue: Journal of Biomedical Semantics

Authors: Sarah M. Alghamdi, Robert Hoehndorf

DOI: 10.1186/s13326-023-00290-y

Abstract

We reformulate the phenotypes of collections of entities using an ontological theory of collections. By reformulating phenotypes of collections in phenotypes ontologies, we avoid potentially incorrect inferences pertaining to the cardinality of these collections. We apply our method to two phenotype ontologies and show that the reformulation not only removes some problematic inferences but also quantitatively improves biological data analysis.

Topics

Applied Ontology

Acknowledged projects